QTB Team Details

Publications

• St. Elmo Wilken, J. M. Monk, P. A. Leggieri, C. A. Lawson, T. S. Lankiewicz, S. Seppälä, C. Daum, J. Jenkins, A. Lipzen, S. J. Mondo, K. W. Berry, I. V. Grigoriev, J. K. Henske, M. K. Theodorou, B. O. Palsson, L. R. Petzold, M. A. O’Malley, Experimentally validated reconstruction and analysis of a genome-scale metabolic model of an anaerobic Neocallimastigomycota fungus, in press at MSYSTEMS, 2021
• St. Elmo Wilken, Patrick A. Leggieri, Corey Kerdman-Andrade, Matthew Reilly, Michael K. Theodorou, Michelle A. O’Malley, An Arduino based Automatic Pressure Evaluation System (A-APES) to quantify growth of non-model anaerobes in culture, AICHE JOURNAL, 2020
• Xuefeng Peng, St. Elmo Wilken, Thomas S. Lankiewicz, Sean P. Gilmore, Jennifer L. Brown, John K. Henske, Candice L. Swift, Kerrie Barry, Igor V. Grigoriev, Michael K. Theodorou, David L. Valentine, Michelle A. O’Malley, Microbial consortia derived from goat feces reveal cross-domain partnerships that accelerate methane release from plant biomass, in press at NATURE MICROBIOLOGY, 2020
• St. Elmo Wilken, Susanna Seppälä, Thomas S. Lankiewicz, Mohan Saxena, John K. Henske, Asaf A. Salamov, Igor V. Grigoriev, Michelle A. O’Malley, Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi, METABOLIC ENGINEERING COMMUNICATIONS, 2019
• Sean P. Gilmore, Thomas S. Lankiewicz, St. Elmo Wilken, Jennifer L. Brown, Jessica A. Sexton, John K. Henske, Michael K. Theodorou, David L. Valentine, Michelle A. O’Malley, Top-down enrichment guides in formation of synthetic microbial consortia for biomass degradation, ACS SYNTHETIC BIOLOGY, 2019
• St. Elmo Wilken, Candice L. Swift, Igor A. Podolsky, Susanna Seppälä, Michelle A. O’Malley, Linking “omics” to function unlocks the biotech potential of non-model fungi, CURRENT OPINION IN SYSTEMS BIOLOGY, 2019
• St. Elmo Wilken, Mohan Saxena, Linda R. Petzold, Michelle A. O’Malley, In Silico Identification of Microbial Partners to Form Consortia with Anaerobic Fungi, PROCESSES, 2018
• John K. Henske, St. Elmo Wilken, Kevin V. Solomon, Chuck R. Smallwood, Vaithiyalingam Shutthanandan, James E. Evans, Michael K. Theodorou, Michelle A. O’Malley, Metabolic characterization of anaerobic fungi provides a path forward for two-stage bioprocessing of crude lignocellulose, BIOTECHNOLOGY AND BIOENGINEERING, 2017
• Susanna Seppälä, St. Elmo Wilken, Doriv Knop, Kevin V. Solomon, Michelle A. O’Malley, The importance of sourcing enzymes from non-conventional fungi for metabolic engineering and biomass breakdown, METABOLIC ENGINEERING, 2017